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    Study MaterialBiochemistry10 Common Mistakes in Biochemistry NEET PG — And How to Avoid Them
    16 February 2026
    biochemistry
    mistake guide
    neet pg 2026

    10 Common Mistakes in Biochemistry NEET PG — And How to Avoid Them

    Avoid the 10 costliest biochemistry mistakes in NEET PG 2026: confused enzyme kinetics (Km, Vmax, competitive vs non-competitive inhibition), wrong glycolysis rate-limiting step (PFK-1, not hexokinase), ketogenic vs glucogenic amino acid mix-ups, urea cycle disorders (OTC, orotic aciduria), vitamin deficiency mismatch by system, collagen type confusion (I bone, II cartilage, III reticular, IV basement membrane), Fredrickson lipid classes, DNA repair defects (XP/HNPCC/BRCA), glycogen storage diseases, and inheritance-pattern errors (CF autosomal recessive, Huntington autosomal dominant, DMD X-linked recessive).

    NEETPGAI EditorialPublished 16 Feb 202634 min read
    10 Common Mistakes in Biochemistry NEET PG — And How to Avoid Them

    Version 1.0 — Published March 2026

    Quick Answer

    The single costliest biochemistry mistake in NEET PG is confusing the rate-limiting enzymes across metabolic pathways — because this concept reappears in Medicine questions on diabetes pathogenesis, lactic acidosis, statin mechanism, and inborn errors of metabolism. To protect your 10-15 biochemistry marks and the 10+ downstream Medicine and Pharmacology marks:

    1. Memorize rate-limiting enzymes with their regulation — PFK-1 for glycolysis (not hexokinase), isocitrate dehydrogenase for TCA, HMG-CoA reductase for cholesterol (the statin target), CPT-1 for fatty acid oxidation (inhibited by malonyl-CoA), CPS-I for urea cycle
    2. Distinguish competitive from non-competitive inhibition on Lineweaver-Burk — competitive = same Vmax, increased Km; non-competitive = decreased Vmax, same Km
    3. Memorize purely ketogenic amino acids — only leucine and lysine (the two Ls); phenylalanine and tyrosine are both ketogenic AND glucogenic, NOT purely ketogenic

    Why biochemistry mistakes are costly

    Biochemistry contributes 10-15 questions to NEET PG (2021-2024 pattern analysis), and while that is fewer than Medicine or Pharmacology, biochemistry errors cascade into Medicine (diabetes, lactic acidosis, liver function interpretation), Pharmacology (drug metabolism via CYP450, statin mechanism, methotrexate), Pathology (hemoglobinopathies, tumor markers), and PSM (nutritional deficiencies in Indian populations). A candidate who confuses PFK-1 with hexokinase as the glycolysis rate-limiting step will also get wrong answers on diabetic ketoacidosis pathogenesis, on fructose-2,6-bisphosphate regulation, and on exercise biochemistry. The biochemistry deficit propagates — the real mark loss is 20-25 across papers, not just 10-15 within biochemistry.

    Unlike Medicine which rewards disease-pattern recognition, biochemistry rewards mechanistic reasoning — "given this enzyme defect, which metabolite accumulates and which is deficient?" Students who memorize enzyme names without pathway positions lose the biochemistry questions AND the clinical integrations. The ten mistakes below are the patterns that consistently appear in wrong-answer analyses across AIIMS, PGI, and private coaching mock papers. Each mistake includes what students typically do, why it fails, the correct approach, and an example MCQ demonstrating the trap.

    For comprehensive biochemistry strategy, pair this guide with the NEET PG biochemistry high-yield topics and the cross-subject common physiology mistakes guide.

    Mistake 1: Confusing enzyme kinetics (Km, Vmax, competitive vs non-competitive inhibition)

    What students do: Mix up Km and Vmax effects of competitive and non-competitive inhibitors; invert the Lineweaver-Burk plot interpretation.

    Why it is wrong: Enzyme kinetics MCQs test Km/Vmax changes, Lineweaver-Burk line convergence, and clinical examples (methotrexate, allopurinol, fomepizole). Getting the kinetics wrong changes every downstream pharmacology answer.

    Correct approach: Memorize the kinetics table with Lineweaver-Burk signatures.

    ParameterNo inhibitorCompetitive inhibitorNon-competitive inhibitorUncompetitive inhibitor
    VmaxBaselineUNCHANGEDDECREASEDDECREASED
    KmBaselineINCREASED (apparent)UNCHANGEDDECREASED
    Lineweaver-Burk y-intercept (1/Vmax)BaselineSame y-interceptDifferent y-intercept (higher)Different y-intercept (higher)
    Lineweaver-Burk x-intercept (-1/Km)BaselineDifferent x-intercept (closer to 0)Same x-interceptDifferent x-intercept (further from 0)
    Overcome by more substrate?—YESNONO
    Classic drug example—Methotrexate vs DHFR; allopurinol vs xanthine oxidase; fomepizole vs alcohol dehydrogenaseCyanide vs cytochrome oxidase (covalent); heavy metalsRare clinically (lithium on inositol monophosphatase)

    Mnemonic: "Competitive competes, can be out-competed → same Vmax. Non-competitive knocks enzyme out → lower Vmax."

    Example MCQ: A drug inhibits dihydrofolate reductase (DHFR). Kinetic analysis shows that adding the drug increases the apparent Km but does NOT change Vmax. The inhibition is best described as:

    • (a) Competitive inhibition
    • (b) Non-competitive inhibition
    • (c) Uncompetitive inhibition
    • (d) Irreversible inhibition

    Answer: (a). Competitive inhibition shows UNCHANGED Vmax (can be overcome with more substrate) and INCREASED Km (apparent — you need more substrate to reach half-max velocity). Methotrexate is a classic competitive DHFR inhibitor. Non-competitive would DECREASE Vmax with UNCHANGED Km.

    Mistake 2: Mixing up glycolysis regulatory enzymes (PFK-1 is rate-limiting, not hexokinase)

    What students do: Call hexokinase the "rate-limiting" enzyme of glycolysis because it is the first step.

    Why it is wrong: Rate-limiting is NOT the same as "first step." Hexokinase is the first step but PFK-1 is the committed, allosterically regulated, rate-limiting step. Getting this wrong costs marks on diabetes pathogenesis, exercise biochemistry, and fructose-2,6-bisphosphate regulation.

    Correct approach: Memorize rate-limiting enzymes with their regulators.

    PathwayRate-limiting enzymeActivatorsInhibitors
    GlycolysisPhosphofructokinase-1 (PFK-1)AMP, fructose-2,6-bisphosphate (F-2,6-BP), insulinATP, citrate, glucagon
    GluconeogenesisFructose-1,6-bisphosphatase-2 (FBP-2)Citrate, glucagonAMP, F-2,6-BP, insulin
    TCA cycleIsocitrate dehydrogenaseADP, Ca2+ATP, NADH
    Fatty acid synthesisAcetyl-CoA carboxylaseCitrate, insulinPalmitoyl-CoA, glucagon, AMP-activated protein kinase
    Fatty acid oxidationCarnitine palmitoyltransferase-I (CPT-I)—Malonyl-CoA (couples to fatty acid synthesis — cannot oxidize and synthesize simultaneously)
    Cholesterol synthesisHMG-CoA reductaseInsulin, thyroxineGlucagon, cholesterol, statins
    KetogenesisHMG-CoA synthase (mitochondrial)Acetyl-CoA excess—
    Urea cycleCarbamoyl phosphate synthetase-I (CPS-I)N-acetylglutamate—
    Pyrimidine synthesisAspartate transcarbamoylase (prokaryotes); CPS-II (eukaryotes)—UTP, CTP feedback
    Purine synthesisGlutamine-PRPP amidotransferasePRPPAMP, GMP, IMP feedback
    Heme synthesisALA synthase—Heme feedback; inhibited in lead poisoning (ALA dehydratase blocked)
    Glycogen synthesisGlycogen synthaseInsulin, glucose-6-phosphateGlucagon, epinephrine
    GlycogenolysisGlycogen phosphorylaseGlucagon, epinephrine, AMPATP, glucose-6-phosphate, insulin

    Example MCQ: Fructose-2,6-bisphosphate is a potent activator of which enzyme in the fed state?

    • (a) Hexokinase
    • (b) Phosphofructokinase-1 (PFK-1)
    • (c) Pyruvate kinase
    • (d) Phosphofructokinase-2 (PFK-2)

    Answer: (b). F-2,6-BP is the most potent allosteric activator of PFK-1 (the rate-limiting step of glycolysis). It simultaneously inhibits FBP-2 (rate-limiting step of gluconeogenesis). F-2,6-BP is synthesized by PFK-2 (a bifunctional enzyme with both kinase and phosphatase activity); insulin promotes its formation by dephosphorylating the bifunctional enzyme. This is how insulin stimulates glycolysis and inhibits gluconeogenesis simultaneously.

    Mistake 3: Confusing ketogenic vs glucogenic amino acids (only leucine and lysine purely ketogenic)

    What students do: List phenylalanine and tyrosine as "purely ketogenic" or list too many amino acids as ketogenic.

    Why it is wrong: NEET PG tests the exact list. Only TWO amino acids are purely ketogenic (leucine and lysine); five are BOTH (isoleucine, phenylalanine, threonine, tryptophan, tyrosine); thirteen are purely glucogenic.

    Correct approach: Memorize the three categories.

    CategoryAmino acidsMetabolic fate
    Purely ketogenic (the two Ls)Leucine, LysineConverted to acetyl-CoA or acetoacetate only; cannot form glucose
    Both ketogenic AND glucogenicIsoleucine, Phenylalanine, Threonine, Tryptophan, TyrosineCan form both ketone bodies and glucose
    Purely glucogenic (remaining 13)Alanine, Arginine, Asparagine, Aspartate, Cysteine, Glutamate, Glutamine, Glycine, Histidine, Methionine, Proline, Serine, ValineEnter gluconeogenesis via pyruvate, OAA, alpha-KG, succinyl-CoA, or fumarate

    Mnemonic: "I'M PTT" for both-ketogenic-and-glucogenic (Isoleucine, Phenylalanine, Threonine, Tryptophan, Tyrosine — note the repeated T pattern in the last three).

    Example MCQ: Which of the following amino acids is PURELY ketogenic?

    • (a) Phenylalanine
    • (b) Tyrosine
    • (c) Leucine
    • (d) Isoleucine

    Answer: (c). Leucine and lysine are the only two purely ketogenic amino acids. Phenylalanine, tyrosine, isoleucine, threonine, and tryptophan are BOTH ketogenic and glucogenic (they yield both acetyl-CoA/acetoacetate AND glucose precursors depending on metabolism). All others are purely glucogenic.

    Mistake 4: Wrong urea cycle disorders (OTC is X-linked; orotic aciduria is pyrimidine synthesis defect)

    What students do: Confuse OTC deficiency (urea cycle, hyperammonemia, orotic aciduria, X-linked) with orotic aciduria (pyrimidine synthesis defect, megaloblastic anemia, NORMAL ammonia, autosomal recessive).

    Why it is wrong: Both conditions have high urinary orotic acid. The differentiators are ammonia level and the metabolic category.

    Correct approach: Distinguish by ammonia, citrulline, inheritance, and clinical presentation.

    FeatureOTC deficiencyOrotic aciduria (UMP synthase def.)CPS-I deficiencyCitrullinemia (ASS deficiency)
    PathwayUrea cyclePyrimidine synthesisUrea cycle (rate-limiting step)Urea cycle
    InheritanceX-linked (only X-linked urea cycle disorder)Autosomal recessiveAutosomal recessiveAutosomal recessive
    AmmoniaHIGH (hyperammonemia)NORMALHIGH (severe)HIGH
    CitrullineLOW (OTC makes citrulline)NormalLOWHIGH (cannot be used downstream)
    Urinary orotic acidHIGH (carbamoyl phosphate spills into pyrimidine synthesis)HIGH (UMP synthase cannot convert orotate to UMP)NORMALNORMAL
    Key clinical featureHyperammonemic encephalopathy in males; milder in heterozygous femalesMegaloblastic anemia, failure to thrive, no hyperammonemiaSevere hyperammonemia in newbornsHyperammonemia in newborns
    TreatmentLow-protein diet + ammonia scavengers (sodium benzoate, phenylbutyrate); liver transplant curativeUridine supplementationLow-protein diet + ammonia scavengersLow-protein diet + arginine

    Example MCQ: A 2-day-old male newborn presents with lethargy, poor feeding, seizures, and coma. Labs show blood ammonia 500 micromol/L (markedly raised), plasma citrulline low, and urinary orotic acid HIGH. The most likely diagnosis is:

    • (a) Ornithine transcarbamylase (OTC) deficiency
    • (b) Orotic aciduria (UMP synthase deficiency)
    • (c) Carbamoyl phosphate synthetase-I (CPS-I) deficiency
    • (d) Phenylketonuria (PKU)

    Answer: (a). OTC deficiency is the only urea cycle disorder that combines HIGH ammonia, LOW citrulline, AND HIGH urinary orotic acid. Inheritance is X-linked — male newborn presentation is classic. Orotic aciduria would show normal ammonia (pyrimidine defect, not urea cycle). CPS-I deficiency would show low citrulline and high ammonia but NORMAL orotic acid (carbamoyl phosphate substrate does not accumulate because CPS-I is defective). PKU presents later with developmental delay, eczema, and a musty body odor — not hyperammonemia.

    Mistake 5: Mixing up vitamin deficiencies by system (B1 beriberi, B12 SCD, niacin pellagra, C scurvy, K clotting)

    What students do: Swap B12 neurological features with folate; attribute pellagra's 4 Ds to B12 instead of niacin.

    Why it is wrong: Vitamin deficiency MCQs are high-yield and integrate with Medicine (anemias), Neurology (SCD), Dermatology (pellagra, scurvy), and PSM (nutrition programs).

    Correct approach: Match vitamin → deficiency disease → signature clinical feature.

    VitaminDeficiency diseaseKey clinical featuresClassic test / pearl
    A (retinol)Xerophthalmia, keratomalaciaNight blindness (early), Bitot spots, corneal ulcerationWHO/UNICEF child supplementation; overdose causes pseudotumor cerebri
    B1 (thiamine)Beriberi, Wernicke-KorsakoffDry beriberi (neuropathy); wet beriberi (high-output heart failure); Wernicke triad (confusion + ophthalmoplegia + ataxia); Korsakoff psychosisALCOHOLICS at risk; always give thiamine BEFORE glucose in suspected alcoholics
    B2 (riboflavin)AriboflavinosisAngular cheilitis, glossitis, seborrheic dermatitis, corneal vascularizationFAD and FMN coenzyme precursor
    B3 (niacin)Pellagra4 Ds: Dermatitis (photosensitive, sun-exposed areas, Casal necklace), Diarrhea, Dementia, DeathCorn-based diet; Hartnup disease; carcinoid syndrome depletes tryptophan
    B5 (pantothenic acid)Rare; burning feet syndromeCoA precursor—
    B6 (pyridoxine)Peripheral neuropathy, sideroblastic anemia, seizures (infants)INH-induced neuropathy; give B6 with INH prophylacticallyPLP coenzyme for transaminases
    B7 (biotin)Rare; dermatitis, alopeciaRaw egg white (avidin) binds biotin — don't eat raw eggs long-termCarboxylation coenzyme
    B9 (folate)Megaloblastic anemia WITHOUT neurological featuresNeural tube defects in pregnancy; preconception supplementation; methotrexate inhibits DHFRMCV raised, hypersegmented neutrophils
    B12 (cobalamin)Megaloblastic anemia WITH neurological featuresSubacute combined degeneration (posterior columns + lateral corticospinal tract); glossitisSchilling test (historical); pernicious anemia (anti-IF antibodies)
    C (ascorbate)ScurvyBleeding gums, perifollicular hemorrhages, corkscrew hairs, poor wound healingCollagen hydroxylation defect; also increases iron absorption
    D (cholecalciferol)Rickets (children), osteomalacia (adults)Bow legs, rachitic rosary, craniotabes, Harrison sulcus; low Ca, low PO4, high ALP, high PTHSun exposure and dietary intake; active form 1,25-(OH)2-D made in kidney

    Key distinctions:

    • B12 vs folate: both cause megaloblastic anemia; only B12 causes neurological features (SCD)
    • Pellagra's 4 Ds = niacin (B3), not B12
    • Wernicke triad = thiamine (B1), not B12 (unless combined deficiency in alcoholics)
    • Scurvy = vitamin C (collagen); bruising with normal platelets and clotting screen

    Example MCQ: A 68-year-old chronic alcoholic man presents with confusion, horizontal gaze paralysis (ophthalmoplegia), and wide-based gait ataxia. Labs show macrocytic anemia. Which vitamin should be administered IMMEDIATELY, BEFORE giving IV dextrose?

    • (a) Vitamin B12 (cobalamin)
    • (b) Folate
    • (c) Vitamin B1 (thiamine)
    • (d) Vitamin C (ascorbate)

    Answer: (c). The classic Wernicke triad (confusion + ophthalmoplegia + ataxia) is thiamine deficiency. In alcoholics, giving IV dextrose without thiamine can precipitate or worsen Wernicke encephalopathy because glucose utilization consumes remaining thiamine stores. ALWAYS give thiamine (100 mg IV) before or with dextrose in any suspected alcoholic or malnourished patient. Vitamin B12 deficiency also causes neurological features (SCD) but not this acute ophthalmoplegic triad.

    Mistake 6: Confusing collagen types (I bone, II cartilage, III reticular, IV basement membrane)

    What students do: Mix up type II (cartilage) and type III (reticular); attribute Alport to type III instead of type IV.

    Why it is wrong: Collagen MCQs test type-to-tissue matching AND disease associations (osteogenesis imperfecta, Ehlers-Danlos, Alport, Goodpasture, scurvy).

    Correct approach: Match collagen type → tissue → disease.

    TypeMain tissuesKey diseases
    Type IBone, skin, tendons, dentin, cornea, sclera, scar tissue (90-99 percent of body collagen)Osteogenesis imperfecta (brittle bones, blue sclera, deafness, dentinogenesis imperfecta); low-quality scar in classical Ehlers-Danlos
    Type IIHyaline cartilage, articular cartilage, vitreous humor, nucleus pulposus of intervertebral discSpondyloepiphyseal dysplasia; Stickler syndrome; achondroplasia is FGFR3 mutation (not collagen per se)
    Type IIIReticular fibers, skin (early wound healing), blood vessels, hollow viscera, granulation tissueEhlers-Danlos vascular type (type IV EDS — confusingly named; arterial and hollow organ rupture risk, short stature, translucent skin)
    Type IVBasement membranes (all epithelial basement membranes, glomerular basement membrane, lens capsule)Alport syndrome (X-linked, alpha-5 chain mutation, progressive nephritis + sensorineural deafness + lenticonus); Goodpasture syndrome (anti-GBM antibodies targeting alpha-3 chain of type IV collagen; RPGN + pulmonary hemorrhage)
    Type VHair, placenta, cell surfaces, minor component of bone and skinClassical Ehlers-Danlos syndrome (joint hypermobility, skin hyperextensibility, atrophic scarring)
    Type XHypertrophic cartilage, epiphyseal plateSchmid metaphyseal chondrodysplasia

    Mnemonics:

    • B-O-N-E = type I (Bone)
    • "CAR two ilage" = type II (Cartilage)
    • "Re-THREE-ticular" = type III (Reticular fibers)
    • "base-FOUR-ment" = type IV (Basement membrane)
    • "Hair-FIVE" = type V

    Collagen synthesis requires:

    • Vitamin C for prolyl and lysyl hydroxylation (scurvy = defective collagen = bleeding gums, corkscrew hairs)
    • Copper for lysyl oxidase cross-linking (Menkes kinky hair disease, occipital horn syndrome)
    • Vitamin B6 and zinc for amino acid metabolism

    Example MCQ: A 17-year-old boy presents with progressive sensorineural hearing loss, hematuria, and anterior lenticonus on slit-lamp examination. Renal biopsy shows thickened and split glomerular basement membrane with a 'basket-weave' appearance on electron microscopy. The collagen type defective in this condition is:

    • (a) Type I
    • (b) Type II
    • (c) Type III
    • (d) Type IV

    Answer: (d). Alport syndrome is an X-linked (80 percent) or autosomal recessive disorder caused by mutations in the alpha-3, alpha-4, or alpha-5 chains of type IV collagen (basement membrane collagen). Clinical triad: progressive nephritis (RPGN-like), sensorineural deafness, and ocular defects (anterior lenticonus, dot-and-fleck retinopathy). Goodpasture syndrome also targets type IV collagen but via anti-GBM antibodies against the alpha-3 chain — Alport is genetic, Goodpasture is autoimmune.

    Mistake 7: Wrong Fredrickson lipid disorder classification

    What students do: Mix up Type IIa (familial hypercholesterolemia, LDL up) with Type IV (familial hypertriglyceridemia, VLDL up); forget Type III (dysbetalipoproteinemia) altogether.

    Why it is wrong: Fredrickson classification is tested in pharmacology questions on statins, fibrates, and niacin.

    Correct approach: Map Fredrickson type to lipoprotein, lipid profile, and clinical presentation.

    Fredrickson typeElevated lipoproteinLipid profileGeneticsClinical features
    Type IChylomicronsExtreme triglycerides (above 1000 mg/dL); normal or mildly raised cholesterolLipoprotein lipase (LPL) deficiency; apoC-II deficiency; autosomal recessiveEruptive xanthomas, lipemia retinalis, acute pancreatitis, hepatosplenomegaly; childhood onset
    Type IIaLDLRaised total and LDL cholesterol; normal triglyceridesLDL receptor mutation (familial hypercholesterolemia); autosomal dominantTendon xanthomas (Achilles, finger extensors), xanthelasma, corneal arcus under age 50, premature atherosclerosis and CAD; MI in 30s-40s in homozygotes
    Type IIbLDL + VLDLRaised cholesterol AND triglyceridesFamilial combined hyperlipidemia; autosomal dominantPremature CAD; xanthelasma; metabolic syndrome association
    Type IIIIDL (remnant)Raised cholesterol AND triglycerides; broad beta band on electrophoresisApoE2/E2 homozygosity (defective remnant clearance); autosomal recessivePalmar xanthomas (highly specific — pathognomonic), tubereruptive xanthomas, premature atherosclerosis
    Type IVVLDLRaised triglycerides; normal or mildly raised cholesterolFamilial hypertriglyceridemia; polygenicEruptive xanthomas, pancreatitis, metabolic syndrome association
    Type VChylomicrons + VLDLExtreme triglycerides and cholesterolApoC-II deficiency; mixed inheritanceEruptive xanthomas, lipemia retinalis, pancreatitis, hepatosplenomegaly

    Treatment pearls:

    • Statin (HMG-CoA reductase inhibitor) — lowers LDL primarily; first-line for Type IIa and IIb
    • Fibrates (fenofibrate, gemfibrozil) — lower triglycerides; first-line for Type I, IV, V and adjunct for III
    • Niacin — lowers VLDL, LDL, and raises HDL; useful in mixed dyslipidemia; side effect flushing (aspirin pretreatment helps)
    • PCSK9 inhibitors (evolocumab, alirocumab) — used in familial hypercholesterolemia refractory to statins
    • Omega-3 fatty acids — adjunct for severe hypertriglyceridemia

    Example MCQ: A 32-year-old man with palmar xanthomas and tubereruptive xanthomas on elbows has total cholesterol 380 mg/dL, triglycerides 520 mg/dL, and lipoprotein electrophoresis showing a broad beta band. Genetic analysis reveals ApoE2/E2 homozygosity. The Fredrickson type and first-line treatment are:

    • (a) Type I; gemfibrozil
    • (b) Type IIa; high-intensity statin
    • (c) Type III; fenofibrate or statin, dietary management
    • (d) Type IV; fibrate monotherapy

    Answer: (c). Palmar xanthomas are pathognomonic for Type III dysbetalipoproteinemia — remnant hyperlipoproteinemia from defective clearance of IDL and chylomicron remnants due to ApoE2/E2. Broad beta band on electrophoresis is diagnostic. Treatment is dietary modification, statins, or fibrates (or combination). Type I and V have extreme triglycerides (above 1000 mg/dL) with eruptive xanthomas and pancreatitis, not palmar xanthomas. Type IIa has tendon xanthomas with LDL elevation and normal triglycerides.

    Mistake 8: Mixing up DNA repair defects (XP for NER, HNPCC for MMR, BRCA1/2 for homologous recombination)

    What students do: Attribute xeroderma pigmentosum (XP) to mismatch repair instead of nucleotide excision repair.

    Why it is wrong: DNA repair defect MCQs test pathway-to-disease matching and inheritance patterns — tested in pathology and genetics sections.

    Correct approach: Match DNA repair pathway → disease → clinical features.

    Repair pathwayFunctionDefective diseaseClinical features
    Nucleotide excision repair (NER)Repairs UV-induced pyrimidine dimers and bulky adductsXeroderma pigmentosum (XP)Extreme photosensitivity, early-onset skin cancers (basal cell, squamous cell, melanoma), photophobia, neurological abnormalities; autosomal recessive
    Mismatch repair (MMR)Corrects DNA replication errors (mismatched bases, insertions, deletions)Hereditary non-polyposis colorectal cancer (HNPCC / Lynch syndrome)Early-onset colorectal cancer (right-sided), endometrial cancer, ovarian cancer, gastric cancer; MSH2, MLH1, MSH6, PMS2 mutations; autosomal dominant; microsatellite instability (MSI-high)
    Homologous recombination (HR)Repairs double-strand breaks using sister chromatid as templateBRCA1/BRCA2 mutationsHereditary breast, ovarian, pancreatic, prostate cancer syndromes; autosomal dominant; sensitivity to PARP inhibitors (olaparib)
    Non-homologous end joining (NHEJ)Repairs double-strand breaks without templateAtaxia-telangiectasia (ATM gene)Cerebellar ataxia, oculocutaneous telangiectasia, immunodeficiency, lymphoma risk, radiation sensitivity; autosomal recessive
    Base excision repair (BER)Repairs single damaged bases (oxidative damage)MUTYH-associated polyposis (MAP)Multiple colorectal adenomas, cancer risk; autosomal recessive
    Fanconi anemia (FA) pathwayRepairs interstrand crosslinksFanconi anemiaBone marrow failure, short stature, cafe-au-lait spots, thumb/radial anomalies, AML risk; autosomal recessive
    Translesion synthesisBypasses DNA damage during replicationXP variant (POLH mutation)Milder form of XP; photosensitivity; skin cancer risk

    Example MCQ: A 6-year-old girl presents with severe photosensitivity, multiple basal cell carcinomas on sun-exposed skin, and a melanoma on the cheek. Parents are consanguineous. The most likely defective DNA repair pathway is:

    • (a) Mismatch repair (MMR)
    • (b) Nucleotide excision repair (NER)
    • (c) Homologous recombination (HR)
    • (d) Non-homologous end joining (NHEJ)

    Answer: (b). Xeroderma pigmentosum is caused by defects in NER — the pathway that repairs UV-induced pyrimidine dimers. Patients develop severe photosensitivity and early-onset multiple skin cancers (BCC, SCC, melanoma) after minimal UV exposure. Autosomal recessive; consanguinity is a risk factor. MMR defect (HNPCC) causes colorectal and endometrial cancer. HR defect (BRCA1/2) causes breast and ovarian cancer. NHEJ defect (ataxia-telangiectasia) causes cerebellar ataxia and lymphoma risk.

    Mistake 9: Confusing glycogen storage diseases (von Gierke, Pompe, Cori, Andersen, McArdle)

    What students do: Mix up von Gierke (hepatic, G6Pase deficiency) with Pompe (cardiac, acid maltase deficiency) and McArdle (muscle, phosphorylase deficiency).

    Why it is wrong: Glycogen storage diseases (GSD) are a high-yield topic. Each GSD has a characteristic enzyme defect, tissue involvement, and clinical triad.

    Correct approach: Match GSD type → enzyme → tissue → clinical features.

    TypeNameEnzyme defectTissue affectedClinical features
    Type IVon GierkeGlucose-6-phosphataseLiver, kidneySevere fasting hypoglycemia, hepatomegaly, lactic acidosis, hyperuricemia, hyperlipidemia, "doll-like" cherubic face; autosomal recessive
    Type IIPompeAcid alpha-glucosidase (acid maltase) — lysosomalHeart, skeletal muscle, liverCardiomegaly (hypertrophic), cardiorespiratory failure in infancy, muscle weakness, hypotonia ("floppy baby"); autosomal recessive; only GSD with lysosomal enzyme defect
    Type IIICori (Forbes)Debranching enzyme (alpha-1,6-glucosidase)Liver, muscleHepatomegaly, fasting hypoglycemia (milder than Type I), muscle weakness, hypotonia; autosomal recessive
    Type IVAndersenBranching enzymeLiver, muscle, heartCirrhosis, hepatomegaly, failure to thrive; autosomal recessive; poor prognosis
    Type VMcArdleMuscle glycogen phosphorylase (myophosphorylase)Skeletal muscle onlyExercise intolerance, muscle cramps, myoglobinuria (dark urine after exercise), second-wind phenomenon; autosomal recessive
    Type VIHersLiver glycogen phosphorylaseLiverMild fasting hypoglycemia, hepatomegaly; autosomal recessive; good prognosis
    Type VIITaruiMuscle phosphofructokinase (PFK-1)Skeletal muscle, erythrocytesExercise intolerance, hemolytic anemia; autosomal recessive

    Key differentiators:

    • Hepatic GSDs (hepatomegaly, fasting hypoglycemia): Types I, III, VI
    • Muscle GSDs (exercise intolerance, cramps, myoglobinuria): Types V, VII
    • Cardiac GSD: Type II (Pompe) — only GSD with cardiac involvement in infancy
    • Most severe: Type II (Pompe, infantile form) and Type IV (Andersen) — cardiorespiratory failure or cirrhosis
    • Second-wind phenomenon: Type V (McArdle) — exercise improves after initial pain because fatty acid oxidation takes over

    Mnemonic: "Very Poor Carbohydrate metabolism" — Von Gierke (I), Pompe (II), Cori (III), Andersen (IV), McArdle (V), Hers (VI), Tarui (VII) — in order, or "VPCAMHT" as a sequence.

    Example MCQ: A 3-month-old infant presents with profound hypotonia ("floppy baby"), cardiomegaly on chest X-ray, and cardiorespiratory failure. Muscle biopsy shows lysosomal glycogen accumulation. The enzyme defect is:

    • (a) Glucose-6-phosphatase
    • (b) Acid alpha-glucosidase (acid maltase)
    • (c) Muscle glycogen phosphorylase
    • (d) Debranching enzyme

    Answer: (b). Pompe disease (GSD II) is caused by lysosomal acid alpha-glucosidase (acid maltase) deficiency. It is the only glycogen storage disease with a lysosomal enzyme defect — glycogen accumulates in lysosomes of all tissues, but the heart and skeletal muscle are most severely affected. Infantile form presents with "floppy baby" phenotype, cardiomegaly, and cardiorespiratory failure — fatal without enzyme replacement therapy (alglucosidase alfa). Glucose-6-phosphatase deficiency = von Gierke (type I, hepatic); muscle phosphorylase = McArdle (type V, exercise intolerance); debranching enzyme = Cori (type III, hepatomegaly).

    Mistake 10: Wrong inheritance pattern for common disorders (CF autosomal recessive, Huntington autosomal dominant, DMD X-linked recessive)

    What students do: Confuse Duchenne with Becker; attribute Marfan to autosomal recessive; forget that cystic fibrosis is autosomal recessive.

    Why it is wrong: Inheritance pattern is the simplest genetics question but carries high-yield pedigree analysis consequences.

    Correct approach: Memorize inheritance patterns by disease category.

    DiseaseInheritanceGeneClinical features
    Autosomal recessive
    Cystic fibrosisARCFTR (chr 7; Delta-F508 commonest)Recurrent lung infections, pancreatic insufficiency, male infertility (CBAVD), elevated sweat chloride
    Sickle cell diseaseARHBB (beta-globin; Glu6Val)Hemolytic anemia, vaso-occlusive crises, autosplenectomy
    Thalassemia majorARHBB or HBATransfusion-dependent anemia, iron overload
    PKUARPAHMental retardation if untreated; musty odor, eczema
    Tay-SachsARHEXACherry-red macula, neurodegeneration in Ashkenazi Jews
    Wilson diseaseARATP7BHepatolenticular degeneration, Kayser-Fleischer rings
    HemochromatosisARHFEIron overload, cirrhosis, diabetes, bronze skin
    Glycogen storage diseases (most)AR—Various tissue-specific presentations
    Urea cycle disorders (except OTC)AR—Hyperammonemia in newborns
    Autosomal dominant
    Huntington diseaseADHTT (CAG repeats)Chorea, cognitive decline, psychiatric features; anticipation
    Marfan syndromeADFBN1 (fibrillin-1)Tall stature, aortic dissection, lens dislocation, arachnodactyly
    Neurofibromatosis type 1ADNF1 (chr 17)Cafe-au-lait spots, neurofibromas, Lisch nodules, optic glioma
    Neurofibromatosis type 2ADNF2 (chr 22)Bilateral vestibular schwannomas, meningiomas
    Familial hypercholesterolemiaADLDLRPremature CAD, tendon xanthomas
    Familial adenomatous polyposisADAPCHundreds of colonic polyps, CRC by age 40
    von Hippel-LindauADVHLHemangioblastomas, RCC, pheochromocytoma
    Polycystic kidney disease (adult)ADPKD1, PKD2Bilateral kidney cysts, hepatic cysts, berry aneurysms
    Osteogenesis imperfecta

    Key distinctions:

    • DMD vs BMD: both are X-linked recessive dystrophin mutations; DMD has frameshift/large deletion → absent protein → severe; BMD has in-frame mutation → partially functional protein → mild
    • Marfan is AUTOSOMAL DOMINANT (not recessive) — FBN1 mutation
    • CF is AUTOSOMAL RECESSIVE (not X-linked despite male-predominant CBAVD)
    • Huntington anticipation — CAG repeats expand in paternal transmission, earlier onset in successive generations

    Example MCQ: A 5-year-old boy presents with progressive proximal muscle weakness, difficulty climbing stairs, calf pseudohypertrophy, and a positive Gowers sign. Serum CK is 12,000 U/L. Muscle biopsy shows ABSENT dystrophin on Western blot. The inheritance pattern is:

    • (a) Autosomal recessive
    • (b) Autosomal dominant
    • (c) X-linked recessive
    • (d) Mitochondrial

    Answer: (c). Duchenne muscular dystrophy is X-linked recessive — defect in the dystrophin gene (DMD, Xp21). Absent dystrophin (frameshift or large deletion) = DMD (severe, wheelchair by age 12); partially functional dystrophin (in-frame mutation) = Becker (milder). Male predominance, maternal carriers (asymptomatic or mild). Female carriers can show mild weakness due to skewed X-inactivation but typically are asymptomatic.

    Comparison table: mistake vs correct approach

    MistakeWhat students doCorrect approach
    Enzyme kineticsConfuse Vmax/Km effects of competitive vs non-competitiveCompetitive: Vmax UNCHANGED, Km UP. Non-competitive: Vmax DOWN, Km UNCHANGED
    Glycolysis rate-limitingCall hexokinase the rate-limiting stepPFK-1 is rate-limiting, activated by F-2,6-BP, inhibited by ATP/citrate
    Purely ketogenic amino acidsInclude phenylalanine/tyrosineOnly leucine and lysine (the two Ls)
    Urea cycle disordersConfuse OTC and orotic aciduriaOTC: X-linked, high ammonia + high orotic acid + low citrulline. Orotic aciduria: AR, normal ammonia + high orotic acid + megaloblastic anemia
    Vitamin deficienciesSwap B12 neurological features with folateB12: megaloblastic anemia + SCD. Folate: megaloblastic anemia WITHOUT neurological features
    Collagen typesMix II and III; attribute Alport to type IIII-bone, II-cartilage, III-reticular, IV-basement membrane (Alport, Goodpasture)
    Fredrickson lipid typesConfuse Type IIa (LDL) and Type IV (VLDL)IIa: LDL up (familial hypercholesterolemia, tendon xanthomas). IV: VLDL up (familial hypertriglyceridemia). III: palmar xanthomas pathognomonic (ApoE2/E2)
    DNA repair defectsAttribute XP to MMRXP = NER defect; HNPCC = MMR; BRCA = HR; ataxia-telangiectasia = NHEJ
    Glycogen storage diseasesConfuse Pompe (lysosomal, cardiac) with other typesPompe (II) = only lysosomal GSD, cardiomegaly in infancy; McArdle (V) = muscle only, second-wind
    Inheritance patternsConfuse CF, Marfan, DMDCF = AR; Marfan = AD; DMD/BMD = XLR; Huntington = AD with anticipation

    Self-check checklist

    Before NEET PG day, confirm you can answer each of these 7 yes/no checks:

    1. Can I draw the Lineweaver-Burk plot signatures of competitive, non-competitive, and uncompetitive inhibition?
    2. Can I list the rate-limiting enzymes of glycolysis, gluconeogenesis, TCA, fatty acid synthesis, fatty acid oxidation, cholesterol synthesis, and urea cycle?
    3. Can I name the only two purely ketogenic amino acids without looking?
    4. Can I distinguish OTC deficiency from orotic aciduria using ammonia, citrulline, and orotic acid levels?
    5. Can I match vitamin deficiencies to their signature clinical triads (B1-Wernicke triad, B3-pellagra 4 Ds, B12-SCD, C-scurvy, K-bleeding)?
    6. Can I match collagen types I-V to their tissues and associated diseases (osteogenesis imperfecta, EDS vascular, Alport, Goodpasture)?
    7. Can I classify the common genetic disorders by inheritance pattern (CF, sickle cell, Marfan, Huntington, DMD, Rett, MELAS)?

    Practice now

    Biochemistry Common Mistakes

    Put this section into practice with 3 NEET PG-style MCQs. Free, instant AI explanation on every answer.

    Practice Biochemistry Common Mistakes MCQs

    Frequently asked questions

    How many biochemistry questions appear in NEET PG?

    Biochemistry contributes 10-15 questions in NEET PG (2021-2024 pattern analysis) spanning enzyme kinetics (Km, Vmax, inhibition patterns), metabolism (glycolysis, TCA, fatty acid oxidation, urea cycle, gluconeogenesis), vitamins and deficiencies, hemoglobin and porphyrins, molecular biology (DNA replication, transcription, translation, repair), lipid metabolism (Fredrickson types), inborn errors (glycogen storage, amino acidopathies, lipidoses), and medical genetics (inheritance patterns, chromosomal disorders). While fewer in absolute count than Medicine or Pharmacology, biochemistry bleeds into Medicine (diabetes pathogenesis, lactic acidosis, liver function interpretation), Pharmacology (drug metabolism via CYP450), Pathology (hemoglobinopathies, leukemia molecular markers), and PSM (nutritional deficiencies). Getting the fundamentals right protects 20-25 marks across papers.

    What is the commonest biochemistry mistake in NEET PG?

    Confusing the rate-limiting and regulated enzymes across metabolic pathways is the costliest biochemistry mistake. Glycolysis rate-limiting enzyme is phosphofructokinase-1 (PFK-1), not hexokinase — hexokinase is the first enzyme but PFK-1 is the committed regulated step, allosterically inhibited by ATP and citrate and activated by fructose-2,6-bisphosphate and AMP. TCA cycle rate-limiting is isocitrate dehydrogenase (inhibited by ATP and NADH, activated by ADP). Gluconeogenesis rate-limiting is fructose-1,6-bisphosphatase-2 (FBP-2). Fatty acid synthesis rate-limiting is acetyl-CoA carboxylase. Fatty acid oxidation rate-limiting is CPT-1 (carnitine palmitoyltransferase-I, inhibited by malonyl-CoA). HMG-CoA reductase is rate-limiting for cholesterol synthesis (the statin target). Urea cycle rate-limiting is carbamoyl phosphate synthetase-I (CPS-I). Getting these wrong cascades into wrong answers on diabetes (liver PFK-2, muscle GLUT4), MSUD, OTC deficiency, and drug mechanism questions.

    What is the difference between competitive and non-competitive enzyme inhibition?

    Competitive inhibition: the inhibitor binds the active site competing with substrate; can be overcome by increasing substrate concentration. Effect on kinetics — Vmax UNCHANGED, Km INCREASED (apparent Km rises because you need more substrate to reach half-max velocity). Lineweaver-Burk plot — lines converge at the same y-intercept (same 1/Vmax) but different x-intercepts (different -1/Km). Classic example — methotrexate competitively inhibits dihydrofolate reductase; allopurinol competitively inhibits xanthine oxidase. Non-competitive inhibition: the inhibitor binds an allosteric site away from the active site; cannot be overcome by more substrate. Effect on kinetics — Vmax DECREASED, Km UNCHANGED (substrate still binds with same affinity but fewer functional enzymes available). Lineweaver-Burk plot — lines converge at the same x-intercept (same -1/Km) but different y-intercepts (different 1/Vmax). Mnemonic — "competitive competes, can be out-competed → same Vmax; non-competitive knocks enzyme out → lower Vmax." Uncompetitive inhibition (rare) — inhibitor binds only the enzyme-substrate complex, decreasing both Vmax AND Km proportionally.

    Which amino acids are purely ketogenic?

    Only two amino acids are purely ketogenic — leucine and lysine. They can only be converted to acetyl-CoA or acetoacetate (ketone body precursors) and cannot form glucose because they cannot enter gluconeogenesis above the oxaloacetate level. Purely glucogenic amino acids (13 total): alanine, arginine, asparagine, aspartate, cysteine, glutamate, glutamine, glycine, histidine, methionine, proline, serine, valine — these enter gluconeogenesis via pyruvate, oxaloacetate, alpha-ketoglutarate, succinyl-CoA, or fumarate. Both ketogenic and glucogenic (5 amino acids): isoleucine, phenylalanine, threonine, tryptophan, tyrosine — these can form both ketone bodies and glucose. Mnemonic — only leucine and lysine are purely ketogenic (remember "the two Ls"). NEET PG tests this by asking "which amino acid is purely ketogenic?" — the correct answer is leucine or lysine, not phenylalanine or tyrosine (which are both ketogenic AND glucogenic).

    What are the key urea cycle disorders?

    The urea cycle has five enzymes; deficiency of any enzyme causes hyperammonemia with neurotoxicity. Most common: ornithine transcarbamylase (OTC) deficiency — the only X-linked urea cycle disorder (all others autosomal recessive). OTC deficiency presents with hyperammonemia, low citrulline (OTC is the step that makes citrulline), and high urinary orotic acid (carbamoyl phosphate substrate accumulates and spills into pyrimidine synthesis → orotic aciduria). Orotic aciduria (pyrimidine synthesis defect) — distinguish from OTC deficiency — presents with megaloblastic anemia and failure to thrive; urinary orotic acid is high but ammonia is NORMAL and citrulline is normal (cause is UMP synthase deficiency, not urea cycle). Carbamoyl phosphate synthetase-I (CPS-I) deficiency — rate-limiting enzyme of urea cycle — severe hyperammonemia, low citrulline, normal orotic acid (no orotate accumulation because substrate is carbamoyl phosphate, not its precursors). Argininosuccinate synthetase deficiency (citrullinemia) — high citrulline, high ammonia, low argininosuccinate. Arginase deficiency — late presentation with progressive spastic paraparesis, high arginine.

    How do the major vitamin deficiencies present clinically?

    Eight high-yield vitamin deficiencies with system-level presentations. Vitamin A (retinol) — night blindness (early), xerophthalmia, keratomalacia, Bitot spots; respiratory infections in children. Vitamin B1 (thiamine) — dry beriberi (peripheral neuropathy), wet beriberi (high-output heart failure), Wernicke encephalopathy (confusion, ophthalmoplegia, ataxia triad), Korsakoff psychosis (anterograde amnesia with confabulation). Vitamin B2 (riboflavin) — angular cheilitis, glossitis, seborrheic dermatitis, corneal vascularization. Vitamin B3 (niacin) — pellagra with the 4 Ds (dermatitis photosensitive in sun-exposed areas, diarrhea, dementia, death); seen in corn-based diets and Hartnup disease. Vitamin B12 (cobalamin) — megaloblastic anemia, glossitis, subacute combined degeneration of spinal cord (posterior columns + lateral corticospinal tract); pernicious anemia is the classic cause. Folate — megaloblastic anemia WITHOUT neurological features (key distinction from B12); neural tube defects if deficient in pregnancy. Vitamin C (ascorbate) — scurvy with bleeding gums, perifollicular hemorrhages, corkscrew hairs, poor wound healing; collagen hydroxylation defect. Vitamin K — bleeding (PT and INR prolonged, APTT prolonged in severe deficiency); newborn hemorrhagic disease; warfarin reversal with vitamin K.

    What are the classic collagen types and their disease associations?

    Five main collagen types are tested in NEET PG with specific disease associations. Type I collagen — bone, skin, tendons, dentin, cornea, sclera, scar tissue (99 percent of body collagen); defective in osteogenesis imperfecta (brittle bones, blue sclera, deafness, dentinogenesis imperfecta). Type II collagen — hyaline cartilage (articular), vitreous humor, nucleus pulposus of intervertebral disc; defective in achondroplasia (FGFR3 mutation, not collagen but FGF receptor), SED (spondyloepiphyseal dysplasia). Type III collagen — reticular fibers, skin, blood vessels, granulation tissue, internal organs; defective in Ehlers-Danlos syndrome vascular type (type IV EDS with arterial and hollow-organ rupture risk). Type IV collagen — basement membrane, glomerular basement membrane, lens capsule; defective in Alport syndrome (X-linked, progressive nephritis + sensorineural deafness + lenticonus) and Goodpasture syndrome (anti-GBM antibodies targeting alpha-3 chain of type IV collagen, causing RPGN + pulmonary hemorrhage). Type V collagen — hair, placenta; defective in classical Ehlers-Danlos syndrome. Mnemonic — B-O-N-E (I), C-A-R-twoilage (II), Re-THREE-ticular (III), base-FOUR-ment (IV). Collagen synthesis requires vitamin C for hydroxylation of proline and lysine — vitamin C deficiency causes scurvy.

    How is biochemistry tested in NEET PG?

    NBE tests biochemistry through six patterns: enzyme kinetics (Km, Vmax, Lineweaver-Burk plots, competitive vs non-competitive inhibition), metabolic pathway rate-limiting enzymes (PFK-1 for glycolysis, HMG-CoA reductase for cholesterol, CPT-1 for fatty acid oxidation), inborn errors of metabolism (PKU, MSUD, alkaptonuria, urea cycle disorders with ammonia and orotic acid levels, glycogen storage diseases by enzyme defect), vitamin deficiency clinical matching (B1-Wernicke, B3-pellagra, B12-SCD, C-scurvy, K-bleeding), collagen type to disease association (I-osteogenesis imperfecta, III-vascular EDS, IV-Alport/Goodpasture), and inheritance pattern matching (CF autosomal recessive, Huntington autosomal dominant, DMD X-linked recessive, Duchenne vs Becker distinction, mitochondrial maternal inheritance). Expect 2-3 biochemistry questions per NEET PG paper in the pre-clinical section. Biochemistry also surfaces in Medicine via metabolic acidosis patterns and in Pathology via tumor markers.

    This content is for educational purposes for NEET PG exam preparation. It is not a substitute for professional medical advice, diagnosis, or treatment. Clinical information has been reviewed by qualified medical professionals.

    Sources and references

    1. Lehninger AL, Nelson DL, Cox MM, Principles of Biochemistry, 8th Edition (W.H. Freeman, 2021) — canonical biochemistry textbook covering enzyme kinetics, metabolism, and molecular biology in depth for NEET PG preparation.
    2. Harper's Illustrated Biochemistry, 32nd Edition (McGraw-Hill, 2022) — Indian-medical-school-standard reference with rate-limiting enzymes, vitamin deficiencies, and inborn errors of metabolism in exam-relevant depth.
    3. DM Vasudevan, Textbook of Biochemistry for Medical Students, 9th Edition (Jaypee, 2019) — widely used Indian biochemistry text with clinical case vignettes and NEET PG-pattern exam questions.

    Strengthen your biochemistry pattern recognition by pairing this mistake guide with the NEET PG biochemistry high-yield topics, the companion common physiology mistakes guide, and the biochemistry subject page. Ready for unlimited AI-powered MCQs with detailed explanations? Explore NEETPGAI Pro.

    For a structured final-month biochemistry plan, try the AI-generated study plan — it sequences enzyme kinetics, metabolism, and inborn errors according to your remaining weeks.


    Written by: NEETPGAI Editorial Team Reviewed by: Pending SME Review Last reviewed: March 2026

    This article is reviewed by qualified medical professionals for clinical accuracy and exam relevance. For corrections or updates, contact the editorial team.

    Share this article

    This content is for educational purposes for NEET PG exam preparation. It is not a substitute for professional medical advice, diagnosis, or treatment. Clinical information has been reviewed by qualified medical professionals.

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    E (tocopherol)Ataxia, peripheral neuropathy, hemolytic anemia in newbornsAntioxidant; rare in adultsFat malabsorption at risk
    K (phylloquinone / menaquinone)Hemorrhagic disease of newborn; adult bleedingProlonged PT/INR; APTT prolonged in severe; warfarin blocks vitamin K cycleIntramuscular vitamin K in newborns prophylactically
    AD (most)
    COL1A1, COL1A2
    Brittle bones, blue sclera, deafness
    X-linked recessive
    Duchenne muscular dystrophy (DMD)XLRDystrophin (DMD gene, chr Xp21) — frameshift / large deletion = absent dystrophinProximal weakness by age 5, Gowers sign, calf pseudohypertrophy, wheelchair by 12, cardiomyopathy; male predominance
    Becker muscular dystrophy (BMD)XLRDystrophin — in-frame mutation = partially functional proteinMilder and later-onset variant of DMD (ambulatory into 30s-40s)
    Hemophilia AXLRFactor VIIIBleeding into joints (hemarthrosis)
    Hemophilia BXLRFactor IXSame clinical as hemophilia A; "Christmas disease"
    G6PD deficiencyXLRG6PDHemolytic anemia after oxidative stress (fava beans, antimalarials, sulfonamides)
    Lesch-NyhanXLRHPRTHyperuricemia, self-mutilation, chorea, retardation
    Fragile XXLRFMR1 (CGG repeats)Mental retardation, macro-orchidism, long face, large ears
    X-linked dominant
    Alport syndrome (most cases)XLDCOL4A5Nephritis + deafness + lenticonus
    Vitamin D-resistant ricketsXLDPHEXRickets resistant to vitamin D replacement
    Rett syndromeXLDMECP2Girls almost exclusively (lethal in males); normal development 6-18 months then regression
    Mitochondrial
    Leber hereditary optic neuropathyMitochondrialmtDNABilateral central vision loss in young adults
    MELASMitochondrialmtDNAStroke-like episodes, lactic acidosis, ragged-red fibers on muscle biopsy
    MERRFMitochondrialmtDNAMyoclonic epilepsy, ragged-red fibers